phenopacket-schema
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phenopackets
Repository for the GA4GH phenopacket schema
In MedicalAction, there is the "action" field which can be either of type Procedure, Treatment, RadiationTherapy or TherapeuticRegimen. Instead of it being named "action" (in a phenopacket json file that...
BodySite and performedOn show a multiplicity of 0-* on the doc. Instead it should be 0-1 just like in the proto file.
The [table with definition](https://phenopacket-schema.readthedocs.io/en/latest/therapeutic-regimen.html#id2) of the `TherapeuticRegimen` contains `status` in the last row. However, according to the corresponding `proto` file, this should have been `regimen_status`.
Dear Phenopacket team, I'd like to ask a question regarding `ReferenceRange`. The `ReferenceRange` requires both `low` and `high` to be specified, both fields are mandatory. However, sometimes it may be...
[ERROR] PROTOC FAILED: ga4gh/vrs/v1/vrs.proto:2:1: Expected top-level statement (e.g. "message").
After clone the repository, I tried to run mvn compile, but got following errors saying Expected top-level statement (e.g. "message"). Please see details below: I google but found no solution....
### Summary Addition of dietary interventions to the phenopacket schema. ### Motivation At the same level as ``Treatment`` I would consider dietary interventions to be of importance in the phenopacket...
@buske Will require an `ethnicity` field adding to Individual: >Re-opening given discussion with Pedigree group on 2022-03-03. This field is useful/required for many test ordering systems. The codes used will...
Add explanation and reference to this issue https://github.com/protocolbuffers/protobuf/issues/2679
The ``gender`` attribute is missing its section within the Explanations of the ``Individual`` block (see [readthedocs](https://phenopacket-schema.readthedocs.io/en/latest/individual.html#explanations) or [GH](https://github.com/phenopackets/phenopacket-schema/blob/master/docs/individual.rst)).