Peter Haverty

I'm afraid there hasn't been any work towards this goal. The suggested example function looks like a good template to follow. I'm still interested in making this happen. Knowing others...

Hi Florian, Thanks for your interest. bigmemoryExtras has recently fallen into disrepair. It could probably be resurrected with some small updates. On Tue, Sep 21, 2021 at 8:37 AM Florian...

The vignette and plot for the R version of glmnet make use of a lambda value corresponding to the smallest model with a mean error within 1 standard error of...

​OK, thanks for the pointer to the docs!​ Pete ____________________ Peter M. Haverty, Ph.D. Genentech, Inc. [email protected] On Thu, Apr 19, 2018 at 2:56 AM, Joe Greener wrote: > Thanks...

I'd like to see it implement the Set API for exact matches and also the ranges operations from IRanges. I'm happy to submit a PR with the full set, but...

, but for now, I'd be stoked just to have the AbstractIntervalTree type and to have the current IntervalTree methods switched to AbstractIntervalTree. Pete --- Peter M. Haverty, Ph.D. Genentech,...

No worries on the PRs. You are welcome to ignore the ones you don't like, of course. It's your show. Thanks for merging them. Good point about the AbstractIntervalCollection. I've...

I have released [GenomicVectors](https://github.com/phaverty/GenomicVectors.jl) which implements my idea for storing ranges along the linearized genome.

Perhaps your iterator has the same trouble as those mentioned here: https://github.com/JuliaLang/julia/pull/26852 ? Pete ____________________ Peter M. Haverty, Ph.D. Genentech, Inc. [email protected] On Wed, Apr 18, 2018 at 2:37 PM,...

When following the iteration suggestion in the "Performance Tips" section, no type instability is observed. e.g. for: reader = open(BAM.Reader, "data.bam") record = BAM.Record() while !eof(reader) read!(reader, record) # do...