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Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
**Describe the bug** stuck in infinity loop with some pdb file **To Reproduce** File: 7szu.pdb1 According to the exmple provided, my_mol=PDBComplex() my_mol.load_pdb('7szu.pdb1') my_mol.analyze() The program will stay in this step...
When installing "**PLIP**" via pip, the "**openbabel**" version mentioned in the requirements and to be installed shows a conflict. Given requirements shows a version of "~=3.0.0", but while installation shows...
**The bug** Other files has the PDB id prefixing the filename like `2v2x_protonated.pdb` or `3gjf.pdb` but the XML report is named `report.xml`. It is annoying because overwrites previous runs. **Expected...
what does PROT_IDX_LIST indicate in the salt bridge? Also, the format is a little strange. For other records, the first 6 columns remain the same and in the salt bridge,...
**Is your feature request related to a problem? Please describe.** PDB files may contain insertion codes and this should be handled by PLIP. **Describe the solution you'd like** A command...
**Describe the bug** For the PDB ID 4e0n, PLIP recognizes a HET record that is actually part of a biological polymer as ligand. **To Reproduce** Steps to reproduce the behavior:...
**Describe the bug** I am analyzing a set of kinases bound to ligand `STU`, as provided by KLIFS. In kinases, the hinge region is usually interacting with the ligand with...
**Describe the bug** PyMol visualisations are not being generated in some cases. I have tried to generate visualization for my complex, but it did not provide them. I have checked...
Hi! I used to PyMOL to add a molecule to a pdb file. PyMOL reads the new .pdb file just fine, but plip reads the added ligand incorrectly. Do you...
Hi, Thanks for your great job on PLIP, which benefits me a lot in my current study. I wonder **how does PLIP handle the alternative location of disorder residues (or...
