Paul Grosu

That would be awesome! Yeah, I mentioned something along these lines a while ago here, and very excited to see it: https://github.com/googlegenomics/spark-examples/pull/49#issuecomment-61376803 Maybe the size of the requested region can...

There also seems to be some duplication between utils-java and ReadConverter as well. Below is basically the same code duplicated in both places: [ReadConverter.java from dataflow-java](https://github.com/googlegenomics/dataflow-java/blob/1f0ca31869c336bc7fb72b2176f4c27de83e6e54/src/main/java/com/google/cloud/genomics/dataflow/readers/bam/ReadConverter.java#L38-53) [ReadUtils.java in utils-java](https://github.com/googlegenomics/utils-java/blob/master/src/main/java/com/google/cloud/genomics/utils/ReadUtils.java#L31-43) It...

@davidadamsphd Less is more ;) Thanks, ~p

Hi Sean, It can be done in batches where you run/save data with one pipeline, and then pick it up with another since the I/O throughput with Google Storage is...

@deflaux Give it a try it with underscores like this, so that the minus sign does not get interpreted: ``` --output-path output/two_way_chr1_pca.tsv ``` Let us know if that works. Thanks,...

Hi Matt, Do you have something I can test locally - like `api-provider-local-java` used to be, but for pipelines - to try out a few ideas for backend pipeline processing...

Hi Matt, I agree it is powerful, but there is lost potential by not tackling some infrastructure and flexibility issues at the start. So there is nothing wrong in being...

The coverage buckets are precomputed? I know the end is fixed, but if the `targetBucketWidth` is changed, wouldn't that require new on-the-fly `meanCoverage` computations? ~p

Aha! Thanks CH for clarifying this for me. Yeah, I agree that in the future that type of granularity would help, but for now that the tried-and-true way of `reads/search`...

Hi Elmer, Okay, I fixed this. Just changed the following lines in `Client.scala`: ``` def apply(applicationName: String, clientSecretsFile: String): Client = { val secrets = GoogleClientSecrets.load(jsonFactory, new InputStreamReader(new FileInputStream(new File(clientSecretsFile))))...