Paul Grosu

Adding Unix file-socket capability to DMTCP

6

This add Unix file-socket capability for DMTCP when a network is not available. Documentation detailing the reasoning: [Checkpointing_The_Initialization_Procedure.pdf](https://www.dropbox.com/s/6fl0xqeo31nnj58/Checkpointing_The_Initialization_Procedure.pdf?dl=1)

I'm opening this issue up, since it's not been posted yet (after the June 15). This is with regards to [#287 for issue # 8](https://github.com/ga4gh/schemas/issues/287#issuecomment-111578618). I posted some of these...

Tilde (~) does not work to refer to the home directory

7

Hi @elmer-garduno, I cannot run it like this: ``` sbt "run --client-secrets ~/me/gg_client_secrets/client_secrets_java.json --spark-master local[4]" ``` and thus need to write the full path: ``` $ sbt "run --client-secrets /home/pgrosu/me/gg_client_secrets/client_secrets_java.json...

Continuing our discussion for simplifying pipelines (and their examples)

4

Hi Matt (@mbookman), So to continue our discussion from https://github.com/googlegenomics/pipelines-api-examples/pull/10#discussion_r55108121, I understand the REST interface here: https://www.googleapis.com/discovery/v1/apis/genomics/v1alpha2/rest But this is too cumbersome for bioinformaticians who just want a turn-key solution...

Move bmi_infra hard-coded project into config file

5

Hi Guys, I propose we move [the following](https://github.com/CCI-MOC/ims/blob/dev/ims/common/constants.py#L125), from being hard-coded in [ims/common/constants.py](https://github.com/CCI-MOC/ims/blob/dev/ims/common/constants.py#L125) to the config file that usually resides in `/etc/bmi/`: `BMI_ADMIN_PROJECT = "bmi_infra"` This causes issues with deployment...

Questions about memory, CPU, and GPU requirements for pre-training and fine-tuning

1

Hi scGPT Team, I really enjoyed reading the paper. It seems the software requires a significant amount of resources, and was wondering if you might have information on the following:...