Padraig Gleeson

@mwatts15 Is there a doc/file somewhere outlining all the mandatory/optional fields in the .openworm.yml?

Thanks @casperdcl. FYI I've added/updated yml files here: https://github.com/openworm/c302/blob/master/.openworm.yml https://github.com/openworm/CElegansNeuroML/blob/master/.openworm.yml https://github.com/openworm/JohnsonMailler_MuscleModel/blob/master/.openworm.yml https://github.com/openworm/muscle_model/blob/master/.openworm.yml https://github.com/openworm/hodgkin_huxley_tutorial/blob/master/.openworm.yml

Some suggestions for harmonising the yml files here: https://github.com/openworm/openworm_docs/issues/70

@rgerkin I managed to run import org.lemsml.jlems fine with a fresh docker ubuntu setup with nC installed as you outline if I run ./nC.sh -python I've not ever used your...

Need to sort this in general for access to resources in Warsaw (for @ccluri and @hglabska) and San Diego...

There is still the issue of the factor which changes the calcium current into changes in [Ca+], thiCa. Related to @VahidGh's comment here: https://gitter.im/openworm/muscle_model on 27 Jan. Still looking into...

Regarding the issue of the inactivation curves not having too much of an effect on the ca current due to the specific parameters shown, these plots show the neuron/muscle example...

Regarding the thiCa value, I've updated the rho value in the nml2 file in this commit: https://github.com/openworm/muscle_model/commit/a65e674ba5b55834e8e956a6cab335a7bab38905, and now the values for thiCa match in compareToNeuroML2.py. I believe thiCa should...

Hi @Ym-Shan. Thanks for your interest in c302. To answer your 2nd question, these files are part of the core neuroml component type descriptions, see here: https://github.com/NeuroML/NeuroML2/tree/master/NeuroML2CoreTypes Docs on these...

Sorry, can you be more explicit about what you are asking here?