Padraig Gleeson

A PR for SimTracker is here: https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/pull/14

Thanks. This would certainly fit in, but would probably be best in a new section on **Model construction/management** as outlined in https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/issues/6. Can merge this and move it there when...

Currently UpdatedSpreadsheetDataReader.py, UpdatedSpreadsheetDataReader2.py & SpreadsheetDataReader.py take under 1 sec to run, while OpenWormReader.py takes ~35sec.

Added link to Binder on https://github.com/openworm/hodgkin_huxley_tutorial/blob/master/notebooks/Python_HH_version/README.md

Looking at Figure 1 more closely, isn't this more relevant to the properties of the current elicited by shining light on the channelrhodopsin expressing muscle cell? Aren't they trying to...

See http://www.nature.com/srep/2014/140819/srep06125/pdf/srep06125.pdf. From Fig 1:  a) above is current through ChR2 channels at different holding potentials. There is a peak on roughly the same time scale as above. How...

I'm still of the impression that the figure above doesn't tell us **anything** about the underlying cell, only the currents through the Chr2 channel... Think about it, the blue trace...

@VahidGh glad that you're making progress with the fitting algorithm. Making slow steady progress myself with optimization using neurotune [here](https://github.com/openworm/CElegansNeuroML/blob/master/CElegans/pythonScripts/c302/tune/c302NetTuner.py) and [here](https://github.com/NeuroML/pyNeuroML/blob/master/examples/tuneHHCell.py). I'd recommend using pynml to validate the generated...

Believe this issue is nothing to do with NeuroML. It seems to be an internal check in Neuron before it gets to export the cell. Maybe throw up a dialog...

@portegys It should be fine to have a copy of the code here. Would be good though to have a big notice in the [README](https://github.com/openworm/robots/blob/master/WormSim/README.md) that [this](https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation) is the main...