Padraig Gleeson

I've just used the simpler print_() statement to make it easier to follow logs across c302/pyNeuroML/libNeuroML etc. e.g. ``` ... c302 >>> Generating plots for: Membrane potentials of 14 neuron(s)...

Hi @Dartomic, Sorry, I had in my mind that I answered this already. First of all, thanks for testing out c302, it's highlighting some issues we've been un aware of....

It would be best to update the individual readmes in the sub directories with the specific details of that code and keep the top level Readme quite brief. Also, it...

Thanks for this @souravsingh. The omt file should be in the same folder as vclamp.m, or even better in a subfolder tests/ and use ../vclamp.m for the filename. It would...

Re the iv_analyse.py script, the latest merge includes the BlueBrainProjectShowcase code to test the analyse_ca_boyle.sh scripts. However generating iv plots etc. is more of an exploration of the behaviour of...

@souravsingh does this work on your local machine with OMV? At the very least 'arget' should be changed to 'target' and you may need a ../ in the path

As mentioned above, the READMEs are still causing confusion, so i've updated the main one pointing to this issue https://github.com/openworm/muscle_model/issues/18.

See https://github.com/openworm/CElegansNeuroML/issues/50#issuecomment-131160546

@VahidGh thanks for this nice summary! That's certainly the detail we need to hammer down the channels. I'll look again at the references for BoyleCohen and see what they are...

This paper is also relevant: searchdl.org/index.php/conference/downloadPDF/1102. Modeling Action Potentials of Body Wall Muscles in C. elegans: A Biologically Founded Computational Approach Callen Johnson and Roger Mailler Channels implemented in NeuroML...