pgaudet

Results 1551 comments of pgaudet

Thanks for bringing that up @huaiyumi One issue I can see is that [GO:0022848 acetylcholine-gated monoatomic cation-selective channel activity](https://amigo.geneontology.org/amigo/term/GO:0022848#display-lineage-tab) is not a signaling receptor activity, but only a [GO:0022857 transmembrane...

@balhoff This seems like a logical problem ? only in bacteria should be disjoint from only in eukaryotes, shouldn't it ?

Hi @balhoff The TC is not in the manually edited file (only_in_taxon). As @ValWood points out, it looks like the "Viridiplantae or Bacteria or Euglenozoa" constraint was added in this...

We already have [chromatin-protein adaptor activity](http://purl.obolibrary.org/obo/GO_0140463) We could add a synonym? I imagine we are describing the same activity?

But then we still need to specify 'genomic DNA I suppose? To avoid annotating to TLR type activities that detect DNA in the cytosol?

@colinlog and I propose that the term label would be '**dbTF DNA binding stabilizer activity'** (or, 'DNA binding transcription factor DNA binding stabilizer activity') with the definition that @colinlog proposes...

Definitely the BPs should be obsoleted. WRT MFs: these terms were created to represent 'caspase activity', but the intention was not to explicitly name 'caspase' because that represents a gene...

It looks like people have not yet reviewed their annotations. Can you ping them? We cannot automatically assign the annotations to 'regulation of apoptotic process' or 'apoptotic process'. Thanks, Pascale

Hi @raymond91125 GO:2001056 positive regulation of cysteine-type endopeptidase activity should also be obsoleted, as a single step BP. This could perhaps be replaced by [cysteine-type endopeptidase activator activity](http://purl.obolibrary.org/obo/GO_0140608), if this...