pgaudet
pgaudet
> This raises a modelling question . I haven't really been modelling these spurious, low reactions, I would say this depends on what you are modeling. Perhaps if you model...
It's in RHEA and EC - usually we've been keeping these.
Benzoin (the substrate of https://www.rhea-db.org/rhea/25968) seems to be produced by plants This is what chatGPT says about Benzoin > Yes, benzoin is considered a natural product, but it's important to...
Yes, RHEA includes any reaction, but not GO. We should put the RHEA as a narrowMatch on the parent reaction (to avoid trying to create the term again).
That's right, we have the regulation of gene expression branch disjoint from metabolic process.
So, you have requested changes to EC and RHEA ? The RHEA entry cites yeast papers: https://www.rhea-db.org/rhea/47040 And the EC reaction is linked to a pombe gene: https://enzyme.expasy.org/EC/2.8.1.14
SGD looks good: https://docs.google.com/spreadsheets/d/1hvlgK0bIMGjkpZ1IzGaL7gxQPBm2IvGf3JyDr1R_d4Y/edit?gid=91001339#gid=91001339 We now lost most of ZFIN, but that's for another time ?? Thanks, Pascale
We should review all 'attachment' terms; these are likely to be MFs.
Yes for chromatin we need to look into what process this really represents
I am assigning myself to add documentation once this is done.