Iman Nazari

Deletions

3

Hello thanks for this amazing work, I used it on Nanopore data, especially my goal was cleaning the data inorder to find Mutations which already confirmed by WES. it seems...

sc-exon-mapping strand checking

2

Hi Luyi Thanks for providing sc-pipe. i have a simple question, whats the meaning of the strand in sc-exon-mapping?? i was trying to use sc-exon-mapping with nanopore data , and...

Ciao Luyi Thanks again for nice work, could you please let me know what's the difference between FSM (which is based on the definition of SQANTI isoformas matched with reference...

Single end reverse strand

1

Thanks for nice job, well done 👍 Naive question, I'm running nanopore at the single cell level, feeding it to the trust 4 to find TCR BCR receptors repertoire, my...

To Deepsimulator thanks, for the nice job I am wondering to know if it's possible to get the events in the fast5 simulated reads by deepsimulator. Thanks Iman

Thanks for the nice job! I was trying to simulate 100K cDNA reads which each read consist of: BC + UMI + Polya(t)+ 1500 (random seq) at first, i couldn't...

Error on running ONT data

4

Hi there, nice job! i already install the tools and all steps perfectly installed , but running it on my own data or on the provided data(simulated one) im getting...