FSM and FSM-match to ref

[parsboy66]

Ciao Luyi

Thanks again for nice work, could you please let me know what's the difference between FSM (which is based on the definition of SQANTI isoformas matched with reference in all splicing junction) and FSM_annotation file at the output of the flames? in this annotation file there I column which is FSM-match to ref, if this is the list of all FSM Isoforms , then what this col7umn tell us?

Thanks Iman