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Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.2.3 to 1.2.13. Commits 2648b9e prepare release 1.2.13 bb09515 fix CVE-2023-6378 4573294 start work on 1.2.13-SNAPSHOT a388193 Merge branch 'branch_1.2.x' of github.com:qos-ch/logback into branch_1.2.x de44dc4 prepare release...

dependabot[bot]

I'm running the docker implementation of this program under Ubuntu, getting an error in the ABR step, and I'm not sure where to begin for troubleshooting. I've attached the (in...

SeanSierra-Patev

M1 Macbook compatibility

1

Hi all, I had successfully run you pipeline a few months ago on an old intel MacBook Pro. I have since upgraded to the new M1 MacBook, but I am...

brittonstrickland

helper tool [suggestion]

1

Hi, if can be of help for others, I made a tool to generate the Excel file from the command line: https://github.com/quadram-institute-bioscience/start-asap/ It's easily installable via Miniconda with `conda install...

telatin

abr fails with example data

4

Hello - I set up a Linux virtual machine (4 CPU, 4GB MEM, 100GB disk with CentOS 8.x) to test out your pipeline. I was able to get the example...

jennahamlin

Tutorial error

5

I am working in bacterial strains isolated from insect-guts and we have several strains sequenced. Asap looks like the kind of program that will very much fit the needs of...

gtsiamis

Add an option to resume a former failed analysis. Skip the reanalysis of all `finished` per isolate steps and only re-run `failed` steps. Option: `--resume`

oschwengers

Doesn't work under conda

2

If it works on conda it'll be more interesting.

abdeljalil-senhaji

This code adds psos support to the asap annotation details table. It is implemented in javascript only and adds biojs-io-fasta and psos.js as externally loaded resources (from remote servers). Visually...

lukasjelonek