abr fails with example data

[jennahamlin]

Hello -

I set up a Linux virtual machine (4 CPU, 4GB MEM, 100GB disk with CentOS 8.x) to test out your pipeline. I was able to get the example data provided to run (example-lmonocytogenes-4). However, the ABR analysis failed for each isolate. I provide the asap log file and one example standard out file below:

asap.log Listeria_monocytogenes_SRR2982078.std.log

Looking over other issues submitted, it appears this was problematic for another user (#18). Any thoughts or suggestions for how to get the ABR analysis to work?

Thanks