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Workflow Description Language - Specification and Implementations

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Dear WDL team! I was hoping to source the community opinion on file bundles, or CWL's secondary files. This issue was spawned from: https://github.com/broadinstitute/cromwell/issues/2269 and also within the [WDL forum](https://gatkforums.broadinstitute.org/wdl/discussion/9299/secondary-index-files-and-directories-in-wdl)...

feature request

In the new spec there is a proposal to make a stricter `runtime` section and provide an optional `hints` section that can be the execution engine but won't hinder the...

I have noticed that when coercing JSON data to a struct (as in `MyStruct x = read_json("data.json")`) miniwdl will give me an error if the JSON object contains contains properties/keys...

clarification

The section on [Concatenation of Optional Values](https://github.com/openwdl/wdl/blob/main/versions/1.1/SPEC.md#concatenation-of-optional-values) currently (as of 1.1) says: "Within expression placeholders the string concatenation operator (+) gains the ability to operate on optional values, to facilitate...

Spec Change
feature request

A shortcoming of the `File` and `Directory` data types is the inability to guarantee the equivalence of inputs, which breaks reproducibility and makes the implementation of call caching (which we...

enhancement
Spec Change
RFC

Hi Would it be possible to allow user to create a `File` variable by concatenating `Directory` + `String` types? This would be useful to point to known files in a...

Spec Change
feature request

Might be related to #446 ? And it could be an SSL certificate issue or if using GitHub Pages the CNAME configuration... ![image](https://user-images.githubusercontent.com/304786/130702892-52ac9adf-b984-4b90-ab0a-83faed6358d7.png) Removing the www. from the URL: ![image](https://user-images.githubusercontent.com/304786/130702975-70b7e03e-b566-4b56-982d-26c3f2698334.png)...

I have a program that wants me to input a fairly large list of files. So far I've been doing this but literally listing them out in array format (Ex:...

To make life easier for authors doing string checks like in https://gatkforums.broadinstitute.org/wdl/discussion/10354/multiple-backends-for-cromwell#latest Eg: ``` File f Boolean a = endsWith(basename(f), ".suffix") Boolean b = startsWith(basename(f), "prefix.") Boolean c = contains(basename(f),...

enhancement
Spec Change
feature request