memote

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[WIP] Replace travis with github actions

4

This is accompanied with a [PR to cookiecutter-memote](https://github.com/opencobra/cookiecutter-memote/pull/21). * [x] fix #706 Github changed the API for authentication (see [deprecation notice](https://developer.github.com/changes/2020-02-14-deprecating-oauth-auth-endpoint/)): * Username+password authentication is no longer possible, it has...

carrascomj

### Checklist - [ X] I searched the [documentation](https://memote.readthedocs.io). - [ X] I looked through [similar issues on GitHub](https://github.com/opencobra/memote/issues). - [ X] I looked up "How to do ... in...

shumantov

### Checklist - [x] I searched the [documentation](https://memote.readthedocs.io). - [x] I looked through [similar issues on GitHub](https://github.com/opencobra/memote/issues). - [x] I looked up "How to do ... in memote" on a...

zhanghaoyu9931

#### Problem description I have a model which I annotated using MetaNetX, and then I wanted to generate a MEMOTE report, to compare it to my pre-MetaNetX model. However, I...

bananabenana

WorkerLostError: Worker exited prematurely: exitcode 155 Job: 210.

5

I got this error when trying to run the test using the online platform. The error message is "WorkerLostError: Worker exited prematurely: exitcode 155 Job: 210." The model is attached...

maxinyi-vi

Codebase/tutorial for addressing output from each test

7

### Checklist - [x] I searched the [documentation](https://memote.readthedocs.io). - [x] I looked through [similar issues on GitHub](https://github.com/opencobra/memote/issues). - [x] I looked up "How to do ... in memote" on a...

zoey-rw

Improve SBO term handling

10

#### Problem description We're really specifically checking for a few node SBO terms and not yet for the presence of any children of those nodes. Ideally, we'd have some internal...

ChristianLieven

TypeError: can't pickle SwigPyObject objects

1

#### Problem description I try to get the diff between two models by this command $ memote report diff /Users/GEM_01.xml /Users/GEM_02.xml and then at the end I got this error...

susanGhaderi

Non-Growth Associated Maintenance Reaction test_ngam_presence

3

the test_ngam_presence is not passed in my model and I do not understand why that is the case. "reversible" is set to false, the reaction is in the cytosol (the...

helenaherand

SBO Terms Annotation Score is incorrect

1

I tried testing a manually curated model with the online (v. 0.11.1) and my local (v. 0.12.1) version of memote. I expected a higher memote score after using more specific...

famosab