memote
memote copied to clipboard
All Gems from Carveme and Agora fail the stoichiometric consistency test.
Checklist
- [x] I searched the documentation.
- [x] I looked through similar issues on GitHub.
- [x] I looked up "How to do ... in memote" on a search engine.
Question
Hello, I employ memote to test GEMs reconstructed using the carveme tool and collected from the agora database. I find that all GEMs have failed the stoichiometric consistency test. However, the stoichiometric consistency test results of GEMs from carveme and agora reported in the memote paper indicate that most of the GEMs can pass the test.
I wonder if this is due to an error in the GEMs we built, or is it caused by memote version update? Here are two examples of my GEMs from my dataset:
- https://memote.io/report/76d66932-473a-42c7-8299-4785991eb8a1
- https://memote.io/report/f810eaab-9a34-43ba-96ab-033bcdb8c489
Looking forward to your reply! Thanks.