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ROBOT is an OBO Tool
When using `--branch-from-term` to extract an object property, the children of the object property are not extracted. E.g.: ``` robot extract -m MIREOT -I http://purl.obolibrary.org/obo/iao.owl \ --annotate-with-source true \ --branch-from-term...
While extracting the terms from from IAO, I noticed that object properties were not being annotation with `rdfs:isDefinedBy` even though I specified ` --annotate-with-source true`. E.g.: ``` robot extract -m...
Again I am probably abusing robot for st. it was not supposed to be ... . I use catalog files to map between logical and physical URIs (among others) for...
I am using `robot mirror -i input.owl -d src -o catalog.xml` to materialize the imports. I am not sure where to generate the catalog file: - if I generate it...
Is ROBOT able to manage special characters in within template annotations? We had a case of an input `robot.tsv` (UTF-8) containing `chāt` But the `robot.ofn` (UTF-8) output after running ROBOT...
Hi! I have an issue with the extract function on EFO. Here is the script I used: ``` wget http://www.ebi.ac.uk/efo/efo.obo robot extract --method MIREOT \ --input efo.obo \ --branch-from-term "EFO:0000408"...
Update obographs to the latest version, published November 2023. - [ ] `docs/` have been added/updated - [X] tests have been added/updated - [X] `mvn verify` says all tests pass...
Resolves #1099, and makes repair command more flexible. - [X] `docs/` have been added/updated - [X] tests have been added/updated - [X] `mvn verify` says all tests pass - [...
Currently the Markdown output of `robot diff ... -f markdown` seems to randomly order the lines under "Added" or "Removed" for each changed entity (e.g., class). I think the output...
Update OWLAPI to version 4.5.28 - [ ] `docs/` have been added/updated - [X] tests have been added/updated - [x] `mvn verify` says all tests pass - [ ] `mvn...