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ROBOT is an OBO Tool
(Apologies in advance if the title isn't quite right - please edit as required!) As discussed on Slack [here](https://obo-communitygroup.slack.com/archives/C01BTR3E8CU/p1699527249831889), I have experienced some odd behaviour when using `robot remove` in...
Derived from #1098 When terms are defined in two different inputs, the act of merging may lead to duplicate annotations. It would be nice to have a quick way of...
## Overview My team is doing some conversions from OWL -> Obographs JSON -> FHIR JSON, and we noticed that [some concepts were missing from the output](https://github.com/HOT-Ecosystem/owl-on-fhir-content/issues/5). I took a...
Resolves #387 - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...
Current explain allows for explanations of a *single* entailed axiom (or explanations of multiple unsatisfiable classes). I would like to be able to gather all explanations for *multiple* entailed axioms....
It would be more consistent with other behavior if `diff` took the default diff output format from the file suffix. The current behavior is a bit confusing, as the default...
On the OBI call today we were looking at ROBOT report results for OBI in the OBO Dashboard: http://dashboard.obofoundry.org/dashboard/obi/robot_report.html The ROBOT report checks for ['duplicate_exact_synonym'](http://robot.obolibrary.org/report_queries/duplicate_exact_synonym) and ['duplicate_label_synonym'](http://robot.obolibrary.org/report_queries/duplicate_label_synonym) treat IAO 'alternative...
I am creating this issue as a continuation of @gouttegd's comment here: - https://github.com/INCATools/ontology-development-kit/issues/622#issuecomment-1589252639 robot `extract` has a subset method described [here](https://robot.obolibrary.org/extract#subset), which is most useful. In the terminology of...
A brief review of the documentation gave me the impression that addition and subtraction functionality is at the entity level. In my case I need to do axiom level subtraction...
The recommendation in the release notes for `robot` 1.9.2 suggests to: > save your ontology with ROBOT 1.9.2 or Protégé 5.6.0 without introducing any changes to the logic or annotations,...
