Oscar Esteban
Oscar Esteban
We are currently propagating the ArrayProxy reported dtype unless an explicit output_dtype is set. It would be more efficient to allow the user set a low memory flag such that...
One of the things I knowingly let drop from the ``apply()`` outsourcing (#195) was the parallelization of resampling. @jmarabotto - do you think this is something you can try to...
https://github.com/nipy/nitransforms/pull/188#pullrequestreview-1760979277
### What happened? Getting: ``` Node: mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI Working directory: /home/oesteban/tmp/hcph-mriqc/work/mriqc_wf/funcMRIQC/SpatialNormalization/d72b6e07efe0979e9d50d06bbb8c3f4cc4361d0d/EPI2MNI Node inputs: compress_report = auto explicit_masking = False flavor = precise float = False initial_moving_transform = lesion_mask = moving =...
### What happened? It seems that the workflow tries to execute the BOLD summary in ``--anat-only`` mode. This is generally okay, but in my case, I have a datalad dataset...
### What happened? This error replicates nipreps/mriqc#1331 (resolved by #1332). ### What command did you use? ```shell fmriprep ``` ### What version of fMRIPrep are you running? master ### How...
Resolves: #1354
This node in the workflow https://github.com/nipreps/mriqc/blob/d5b13cb56b6de1493ad91979f0e1e48ebb6708db/mriqc/workflows/functional/output.py#L95-L100 often causes memory errors. In a quick review, I believe casting here https://github.com/nipreps/mriqc/blob/d5b13cb56b6de1493ad91979f0e1e48ebb6708db/mriqc/interfaces/functional.py#L229 to float32 would be safe and have zero effects on the...
``` /home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: divide by zero encountered in divide s = sum_m2 / (2 * K * sigma**2) /home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: invalid value encountered in divide s = sum_m2 / (2...