Oscar Esteban

This is an issue to continue with the conversation initiated here: https://github.com/nipreps/niworkflows/pull/512#discussion_r421096656

It is becoming more apparent that a more generalizable code for summary interfaces is necessary. Additionally, in the context of multi-site studies, we should have more flexibility to add more...

Automatically generate a "Data" (image acquisition) boilerplate

11

This can be easily done just mapping the JSON sidecar files to text. (Suggested by Sam Nastase in his open review to the preprint)

Propagate TR from BIDS structure to NIfTI dims

3

Transfer from poldracklab/fmriprep#1093.

Write a yaml report schema that generates group reports, e.g. by selecting the corresponding "reportlets" and appending them together for all the spatial normalizations across subjects. (an original idea of...

Improve look and feel of fMRIPlot

2

- [ ] Allow setting figsize - [ ] Revise labels positioning and fonts sizes

Bring hard-links of gzipped files back

1

In #295 we discontinued hard-linking gzipped files to address poldracklab/fmriprep#1480. The request here would be to bring those back whenever possible (see https://github.com/poldracklab/niworkflows/pull/295#issuecomment-459441516).

Rodent brain?

8

How unfeasible would be to transfer learning a model on to a rat brain? What would it be necessary (e.g., number of animals/scans and input types -anatomical image T1w or...

Set number of threads in MRTrix3's interfaces

2

The number of threads is configurable through a text file - https://mrtrix.readthedocs.io/en/latest/getting_started/config.html

@effigies @mgxd