Data loader fails with NiWorkflows installed in editable mode

[oesteban]

What happened?

Getting:

Node: mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI
Working directory: /home/oesteban/tmp/hcph-mriqc/work/mriqc_wf/funcMRIQC/SpatialNormalization/d72b6e07efe0979e9d50d06bbb8c3f4cc4361d0d/EPI2MNI

Node inputs:

compress_report = auto
explicit_masking = False
flavor = precise
float = False
initial_moving_transform = <undefined>
lesion_mask = <undefined>
moving = boldref
moving_image = /home/oesteban/tmp/hcph-mriqc/work/mriqc_wf/funcMRIQC/SpatialNormalization/d72b6e07efe0979e9d50d06bbb8c3f4cc4361d0d/SharpenEPI/sub-001_ses-001_task-bht_dir-LR_echo-1_part-mag_desc-realigned_bold_tstat_corrected.nii.gz
moving_mask = /home/oesteban/tmp/hcph-mriqc/work/mriqc_wf/funcMRIQC/synthstrip_wf/d72b6e07efe0979e9d50d06bbb8c3f4cc4361d0d/synthstrip/clipped_corrected_desc-brain_mask.nii.gz
num_threads = 12
orientation = RAS
out_report = report.svg
reference = boldref
reference_image = /data/datasets/templateflow-s3/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz
reference_mask = /data/datasets/templateflow-s3/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz
settings = <undefined>
template = MNI152NLin2009cAsym
template_resolution = <undefined>
template_spec = <undefined>

Traceback (most recent call last):
  File "/home/oesteban/workspace/mriqc/mriqc/engine/plugin.py", line 64, in run_node
    result['result'] = node.run(updatehash=updatehash)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node EPI2MNI.

Traceback:
        Traceback (most recent call last):
          File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
            runtime = self._run_interface(runtime)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/niworkflows/interfaces/norm.py", line 181, in _run_interface
          File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/niworkflows/interfaces/norm.py", line 171, in _get_settings
          File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/niworkflows/interfaces/norm.py", line 171, in <listcomp>
          File "/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/pathlib.py", line 931, in iterdir
            for name in os.listdir(self):
                        ^^^^^^^^^^^^^^^^
        FileNotFoundError: [Errno 2] No such file or directory: '/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/niworkflows/data'

What command did you use?

mriqc

What version of the software are you running?

master

How are you running this software?

Other

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

No response

Additional information / screenshots

No response

[effigies]

This doesn't look editable: python3.11/site-packages/niworkflows/interfaces/norm.py"

Is it possible you need to reinstall?

[oesteban]

Yes, after reinstalling I couldn't replicate within ipython. Checking with mriqc now. I'll close as soon as I confirm it was a stale environment.