bio-attribute-ontology

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EFO-OBA mapping (gene expression measurement)

2

- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv) - filtered by **attribute_label**: _gene expression_ subject_id | subject_label | match_type | quality | quality_label | attribute | attribute_label -- | -- | --...

ar-ibrahim

Add new bone length from to DOSDP pattern template

8

If applied, this commit will fix #73.

rays22

Add draft pattern for bone length from to

14

suggested pattern for auto-classification under bone length. Not attempting to devise EquivalentClass def for these as too hard to do that while fulfilling simple classification use case. ```yaml length pattern:...

dosumis

Design patterns for describing protein molecular attributes for UniProtKB/Swiss-Prot

1

SIB curators are moving from free text annotation describing the effects of variation on protein structure and function, e.g. "reduces protein stability", "interferes with zinc binding". They have figured out...

rays22

EFO-OBA mapping (antibody measurement)

2

- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv) - filtered by **attribute_label**: _antibody_ subject_id | subject_label | match_type | quality | quality_label | attribute | attribute_label -- | -- | -- |...

ar-ibrahim

Add draft pattern for bone length along an axis

7

This commit intends to add a yaml template file for DOSDP pattern bone length along an axis. If applied, this commit will fix #80.

rays22

EFO-OBA mapping (morphology and related traits)

1

- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv) - filtered by **quality_labels**: _morphology, size, shape, length, circumference and thickness._ subject_id | subject_label | match_type | quality | quality_label | attribute | attribute_label...

ar-ibrahim

Adopt this QC check for OBA: https://github.com/mapping-commons/mh_mapping_initiative/blob/master/.github/workflows/qc.yml

matentzn

add / update response to trait terms - needed for EFO/GWAS

1

Background: GWAS currently curates variants that are associated with changes in the response to some chemical using GO 'response to' terms. (biological process). We need OBA trait terms for these...

dosumis

We didnt manage to do this for today's paper deadline but we should not drop the ball here.

matentzn