bio-attribute-ontology
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obophenotype
source files for OBA (Ontology of Biological Attributes)
From slack:  We should consider migrating terms like "motor coordination" to OBA.
In order to integrate trait data from VT in OBA, we need to make sure that OBA and VT are constantly synchronised. - [X] Create a script that lists all...
Import VT terms used by the Mouse Phenome Database into OBA. - [x] Create a google sheet for building EQs - [ ] Assign OBA ids the way we usually...
Todo for Mouse-Human Ontology Mapping Initiative (MHMI) issue [#15](https://github.com/mapping-commons/mh_mapping_initiative/issues/15) - [x] @rays22 Publish a VT-OBA mapping in SSSOM here and share with Elissa's team [oba_vt.sssom.tsv] - [ ] @rays22 Merge...
general grouping class for 'bone' traits general grouping class for 'morphology' traits both will have 'characteristic of part of' rather than 'characteristic of' so that terms can be nested As...
To maximise the interoperability, we need to ensure that morphology, amount etc patterns in OBA work with uPheno 1. Use Yasgui as basis: https://api.triplydb.com/s/gRdt-S9PK Ubergraph: ``` PREFIX dcterms: PREFIX obo:...
OBA:VT0008073 CD4-positive T cell quantity OBA:VT0008077 CD8-positive T cell quantity OBA:VT0008038 NK T cell quantity OBA:VT0010441 parasite quantity OBA:VT0010440 bacteria quantity VT:1000189 offspring quantity OBA:1000859 brood size quality exact synonym...
After the next release we should set `src/ontology/profile.txt` missing_definition to ERROR. These need to be fixed: - [ ] missing_definition OBA:0000001 IAO:0000115 - [ ] missing_definition OBA:0000069 IAO:0000115 - [...
What is our strategy with regards to communicating scope? We are clearly focused on metazoa/vertebrates, but a small number of traits like http://purl.obolibrary.org/obo/OBA_1000043 may cause confusion.
- filtered volume terms from [unreviewed EFO-OBA mappings list](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv) - will add using [entity_attribute pattern](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/patterns/data/default/entity_attribute.tsv) subject_id | subject_label | quality | quality_label | attribute | attribute_label -- | -- |...
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source files for OBA (Ontology of Biological Attributes)