bio-attribute-ontology

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Many OBA definitions are trivially derived using Design Patterns. For more info see: https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/patterns Currently the provenance field has `[AUTO:patterns/patterns/entity_attribute_location]` which is not meaningful. This should be changed to a...

cmungall

Map TopMed65 phenotypes to OBA

5

See appendix in https://docs.google.com/document/d/1e77a7dZ9I1FcXHbK-CXkbXmP5xywsw1dePsoxX_E6OM/edit?ts=5abd358b 65pheno

cmungall

Create slim for use by TopMed

1

Create a subset of a few hundred terms potentially relevant to TopMed, drawn from existing OBA terms and creating new ones prospectively This would include the TopMed 65 phenotypes

cmungall

Tried PATO first, PATO would not have them. They suggested OBA. Here goes: **Editor preferred term:** axillary temperature **Textual definition:** Temperature of a human's axilla. **Definition source:** EuPath team **Proposed...

Aqua1ung

patterns: https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/patterns csvs: https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/modules

cmungall

See https://github.com/OBOFoundry/OBOFoundry.github.io/issues/285 Need to consider ramifications for bundling taxon-specific trait ontologies

cmungall

We want to add rules of the form ``` change in attribute A CAUSES change in attribute B ``` For example ``` abnormal quality and inheres_in lung morphogenesis SubClassOf abnormal...

cmungall

Currently we have an undocumented extension to DOSDPs: https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/ontology/patterns/entity_attribute.yaml#L38-L47 it's not very elegant and is problematic due to different rules for URI expansion with ofn

cmungall

- Please obsolete: excitatory/inhbitory postsynaptic membane potential The correct terms, now in GO, are 'excitatory/inhbitory postsynaptic membane potential' (GO_0060079 & GO_0060080). Llike action potentials, these are not qualities, but processes...

dosumis

I came across this one: http://www.atol-ontology.com/index.php/en/bibliographie-en I wonder if these should be included in some kind of xrefing here. Not sure if there's data yet out there using these terms,...

nlwashington