hap.py
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--version option not working on pre.py and hap.py
I can't get the versions of pre.py and hap.py:
$ hap.py --version
Hap.py
and
$ pre.py --version
usage: VCF preprocessor [-h] [--location LOCATIONS] [--pass-only]
[--filters-only FILTERS_ONLY] [-R REGIONS_BEDFILE]
[-T TARGETS_BEDFILE] [-L] [--no-leftshift]
[--decompose] [-D] [--bcftools-norm] [--fixchr]
[--no-fixchr] [--bcf] [--somatic]
[--set-gt {half,hemi,het,hom,first}] [--filter-nonref]
[--convert-gvcf-to-vcf]
[--gender {male,female,auto,none}] [-v] [-r REF]
[-w WINDOW] [--threads THREADS] [--logfile LOGFILE]
[--verbose | --quiet]
input output
VCF preprocessor: error: too few arguments
I've tried this using the bioconda::hap.py=0.3.14 conda package and the quay.io/biocontainers/hap.py:0.3.14--py27h5c5a3ab_0 Docker image.
Is anyone else having this problem? And is there any way I can fix this? Thanks!