Ilya Shlyakhter
Ilya Shlyakhter
Thanks a lot for the fast and detailed answer! > when reading, the value is in binary, and the given tag-type describes how to parse it By "given tag-type" you...
@marekkokot for filtering paired reads you could use strand information: if the kmers come from one strand only (e.g. kmers from a genome), you could check that read1 has kmers...
@marekkokot For the most precise filtering, you'd have kmc_tools filter take as input _two_ single-strand kmer databases: one made by kmc -b from a set of genome sequences, and one...
#142 suggests a way to do this with a fairly small change to KMC. Funny how two similar requests independently got posted on the same day. @marekkokot
> Is that what you're looking for? All alignments that generate the highest score? Right. >For global alignments, are there actually multiple different alignments with the same best score? For...
I'd vote for a second set of trace functions, since many (most?) use cases don't need all alignments.
P.S. Is there any workaround in the current seqan3 release, that would allow preserving pb: header tags? We're writing a tool that adds tags to bam records, and it should...
Hi @eseiler and @rrahn, Thanks for the response (and for seqan generally). My current use case involves converting some code from python/biopython to C++/seqan3, and trying to ensure that the...
I'd like to second the request for this feature.