Ilya Shlyakhter
Ilya Shlyakhter
@Lykos153 When running git-annex-remote-googledrive setup, Google gives a warning about the app not being verified. Maybe, submit it for verification?
Sometimes a test should _always_ be skipped, e.g. because we generate tests by first generating all possible combinations of parameters and then calling pytest.skip inside the test function for combinations...
If output of task A is read by task B, and both tasks support streaming, then they can be run in parallel, rather than sequentially, using a named pipe to...
It would be great if there was an option to treat function headings, class headings etc (as matched by regexps) as outline subheadings under the nearest preceding outline, so they...
Visibility-cycling a headline that is open and has no children should go directly to folded state, rather than doing nothing.
With outshine, TAB puts the cursor on the innermost (most indented) python scope; in the original Python mode, TAB cycles the cursor between possible scopes . So, originally, for i...
I feel uncomfortable storing in my config file AWS keys that can be used without multi-factor authentication. AWS lets you create an IAM user with a security policy that requires...
When determining GATK version (e.g. for choosing version-specific switches), base it on the actual GATK jar, rather than on tools.gatk.TOOL_VERSION_TUPLE . Fix how GATK jar is extracted in refine_2x_and_plot task....
testing-related fixes: update requirements-conda-tests versions; split travis-ci pytest jobs into parts; drop uninformative reports of skipped tests.
De novo contigs sometimes glue together non-adjacent pieces of the genome, or repeat the same piece twice. Add a step, as in QUAST and SHIVER, to blast the contigs against...