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Enable Kmer counting at peptide level

Open ritah-nabunje opened this issue 4 years ago • 1 comments

I would like to compare kmers from two nucleotide sequence fasta files but at the amino acid level, whereby DNA sequence --> peptide sequence --> kmer comparison at aa level --> extract non-unique kmers. Could this be enabled?

ritah-nabunje avatar Jan 09 '20 10:01 ritah-nabunje

#142 suggests a way to do this with a fairly small change to KMC.

Funny how two similar requests independently got posted on the same day.

@marekkokot

notestaff avatar Jan 13 '20 23:01 notestaff