niworkflows
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nipreps
Common workflows for MRI (anatomical, functional, diffusion, etc)
Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4. Release notes Sourced from jinja2's releases. 3.1.4 This is the Jinja 3.1.4 security release, which fixes security issues and bugs but does not otherwise...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.66.2 to 4.66.3. Release notes Sourced from tqdm's releases. tqdm v4.66.3 stable cli: eval safety (fixes CVE-2024-34062, GHSA-g7vv-2v7x-gj9p) Commits 4e613f8 Merge pull request from GHSA-g7vv-2v7x-gj9p b53348c cli:...
``` FutureWarning: The 'delim_whitespace' keyword in pd.read_csv is deprecated and will be removed in a future version. Use ``sep='\s+'`` instead ```
Some changes have been applied using pyupgrade. Most changes have been applied manualy.
Bumps [idna](https://github.com/kjd/idna) from 3.6 to 3.7. Release notes Sourced from idna's releases. v3.7 What's Changed Fix issue where specially crafted inputs to encode() could take exceptionally long amount of time...
### What happened? Comes from nipreps/mriqc#1261. When a filter is given (e.g.: `{'pet': {'session': '15'}}` but there's no query for `'pet'` as a suffix, then `collect_data` fails. It would be...
Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.2.0 to 10.3.0. Release notes Sourced from pillow's releases. 10.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html Changes CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [@hugovk] Use functools.lru_cache for hopper() #7912 [@hugovk]...
### What happened? Originally posted in https://github.com/PennLINC/xcp_d/issues/1064#issuecomment-1966634300 When different nodes try to access the same file simultaneously (especially when run pipelines in parallel), the file could be inaccessible (for XCP-D...
### What would you like to see added in this software? This stems from today's NiPreps Technical Monitoring meeting. Recently, I updated ASLPrep to match fMRIPrep's fit-apply restructuring, and there...
