gubbins

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python 3.5.0 not recognised by 'configure'

1

Hello, I'm trying to install gubbins and have all the prerequisites available as described in the documentation, however configure is failing when trying to identify the python version. This is...

jamesabbott

FastTree doesn't honour --num_threads due to OpenMP vars

2

FastTree uses OpenMP and respects the `$OMP_NUM_THREADS` variable. Can you override that variable if the user specifies `--num_threads` ? It should still respect the overall `$OMP_THREAD_LIMIT` variable.

tseemann

See title

andreas-wilm

Hi Nicholas, I got an average of 1,335,737 recombination bases within the 3,936,291 bp genome. I wonder if the average value is normal or too large. I have noticed that...

QianGuoPKU

In Mac : "conda install bioconda::gubbins" command installs Gubbins 2.3.4 In CentOS: its just hanging there for hours. Could you try to fix it?

ajkarloss

Conda Gubbins 3.3.4 : Not able to install

2

H, Thanks a lot for the updates. But not able to install the 3.3.4 through conda. We tried in CentOS and Mac. Both are just hanging there.

ajkarloss

Unable to install gubbin

4

Hi, I was trying to install Gubbins through the Recommended installation method - conda and OSX/Linux - installing from the repository in my local terminal. I had downloaded and installed...

dzc0104

Update to 3.4.3

1

- Allows for file names with spaces in (#394) - Fixes installation issues with `numba` (#395 and #396)

nickjcroucher

change number of column in country legend from 1 to 2

drxilu

Hi @nickjcroucher, this is my first PR to the project. I did not create an issue first, because the changes proposed are trivial. What do you think? This PR bumps...

afuetterer