rnaseq

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### Description of feature I propose that sample names should be checked for validity at the beginning of the run. The aim would be to look for common character errors...

fruce-ki

Accept uncompressed files, for instance fastq

1

### Description of feature We are currently going through the headache of having to wait for gzip to compress fastq files just to be able to run them in this...

TheWizier

Add support to use the pipeline with NGS generated using zymo research kit

3

### Description of feature https://www.zymoresearch.de/products/zymo-seq-switchfree-3-mrna-library-kit

Ahmedalaraby20

The workflow NFCORE_RNASEQ doesn't use any parameter and instead takes `params` values from the global scope instead of using them as inputs: https://github.com/nf-core/rnaseq/blob/1af00b93bd59f7f4e287085a2d6b95bf79a6276d/main.nf#L160 Instead, it should be tightly scoped and...

adamrtalbot