proteomicslfq
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nf-core
Proteomics label-free quantification (LFQ) analysis pipeline
Version `2.14.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
Your process runs quite well, would you consider further refining it to incorporate the MaxQuant workflow?
It would be great if the readme could get a highlevel overview of the pipeline by describing the major steps + a visual overview
Greetings, I am a new user to nf-core and currently trying to establish nf-core proteomicslfq pipeline on my personal local PC. Unfortunately, I am facing error with search engine comet....
Hello, I am new to proteomics and am trying to understand the mzTab output file. Specifically, I am looking for information about the `opt_` columns and how to interpret the...
I've encountered two errors in the "quantms" module for MultiQC during the "pmultiqc" step: 1. If the experimental design file ("--input" parameter) uses the one-table OpenMS format (see https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/classOpenMS_1_1ExperimentalDesign.html#details), I...
I ran the ProteomicsLFQ workflow on some test data on a machine with 64 GB RAM. If I don't change the "--max_memory" setting (default: "128.GB"), the pipeline fails during the...
The current "dev" version of the workflow fails for me on the self-test data. The log output is included below (as part of "pipeline_report.txt") , but the cause of the...