funcscan
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nf-core
(Meta-)genome screening for functional and natural product gene sequences
### Description of the bug deeparg 1.0.2 is using an old repository path to download the databases (https://bench.cs.vt.edu/ftp/) which does not exist. deeparg 1.0.4 fetches data correctly from https://zenodo.org/records/8280582/files/deeparg.zip. Singularity...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested, add...
### Description of the bug A couple of months ago we had a slack thread about how `NFCORE_FUNCSCAN:FUNCSCAN:GUNZIP_PYRODIGAL_FNA` gets confused with meta.id and gz file path if sample names are...
Replaces classic workflow with nf-tests (third attempt) ## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug...
### Description of the bug - SeqKit split should go into Annotation. - Arrows could be used instead to indicate long and short contigs (short arrrow for short, long arrows...
### Description of feature On the current dev branch, AMPcombi and how to provide its DRAMP database with `--amp_ampcombi_db`, is not mentioned in the usage.md (as is for all other...
### Description of feature The new version of antismash requires essential parametrs that i would suggest to be included in the pipeline. Those are `pfam2go --rre --tfbs` at the moment...
### Description of feature AMPcombi is now completely restructured, to better suit the ouput of FUNCSCAN
### Description of feature Adapt deepBGC to use GPU, at the moment it uses CPU and for large input datasets takes ages to run.
### Description of feature As it is now supported: https://multiqc.info/modules/bakta/