eager
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nf-core
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Version `2.5` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
Removed the second fastq in the SE data in the example of the TSV input, since this should be NA for single-end data ## PR checklist - [x] This comment...
From the tail end of https://github.com/nf-core/eager/issues/382 I suggested that we make a section of the README for things like complementary scripts and tools that are amenable for use with nf-core/eager,...
# nf-core/eager feature request Allow mapped reads to be converted to fastq for input into metagenomic screening steps. ## Is your feature request related to a problem? Please describe Lack...
## Is your feature request related to a problem? Please describe Currently have to run the eager pipeline twice if I want to map the same data to the human...
Cause that makes manual merges difficult
In Eager's multiqc-output, where the results from SexDetERRmine are listed, varies. In cases where there are multiple libraries for a sample, the output is listed at the sample level (because...
When the mean coverage is below 0.05X, the general stats table only shows 0.0X For low coverage data an increase in significance would be helpful. When mean coverage is 0.02495,...
It's now on bioconda, and seems that it will be more often used at EVA