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Upgrade kryo to 5.4.0

9

Closes #2734 I was able to successfully resume a pipeline on AWS Batch with an S3 file that contains spaces in the filename. I just upgraded kryo to 5.4.0 --...

bentsherman

Changes in object input structure use cached values rather than starting new runs for exec

1

## Bug report ### Expected behavior and actual behavior Changes to objects passed as input should trigger new runs when using `-resume`. When changing an object's structure, e.g. putting it...

mahesh-panchal

Creating a channel from an input list makes list unusable if it hasn't been touched before

1

## Bug report This is a weird one ... ### Expected behavior and actual behavior When taking a list input in a workflow and creating a channel from it, list...

FynnFreyer

Project currently is stuck on revision xxx when using -latest flag

13

## Bug report I get the error message: `Project xxx currently is sticked on revision: yyy -- you need to specify explicitly a revision with the option `-r` to use...

marcadella

DAG output does not include channel name for multiMap

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## Bug report DAG output does not include channel name for multiMap. Root node is defined by: ```groovy chowlkDiagrams = Channel.fromPath(params.sourceDir + '/*.xml') .multiMap { it -> toTtl: toPng: it...

GordianDziwis

Fix unescaped spaces and parentheses in container env script

2

Close #1549

bentsherman

Azure Batch validates the region before checking available VMs

3

If the Azure region was invalid (i.e. useast vs eastus) Nextflow would still check for regions. This PR checks for the existence of a region before checking for available VMs....

adamrtalbot

tap operator doesn't work with pipes

7

### Discussed in https://github.com/nextflow-io/nextflow/discussions/3919 Originally posted by **glormph** May 5, 2023 Hi, I have tried and failed to use `tap` in DSL2 with pipes: ``` ch1 | SomeProcess | tap...

bentsherman