nextflow

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Raise error if cpus value is negative

2

Related to customer ticket: https://support.seqera.io/helpdesk/tickets/3774 An alternative would be to simply log a warning and return 1 cpu if the cpus value is negative.

bentsherman

Fix issues with workflow complete handler

5

Close #3129 - Call workflow complete handler on all workflow errors, including session `abort()` (as well as other shutdown callbacks and observers) - Add `log` to complete/error handler context so...

bentsherman

Use shell directive with trace command in wrapper script

1

Close #4209

bentsherman

More helpful warnings when publish fails to create parent directory

3

At the moment, if publishing a file fails because of permissions, Nextflow will return an error indicating the Access Denied exception, but will not indicate which file was the problem....

robsyme

Fail if glob does not exist with `checkIfExists: true`

2

Close #4223

bentsherman

Add timeout operator

1

Close #2248 It's very close, but the only problem is that the workflow doesn't terminate. The log reaches the message `Execution complete -- Goodbye` at the very end, but then...

bentsherman

Dry run

5

Close #844

bentsherman

Config schema

4

Close #4200 Adds a helper method to check a config scope for invalid options. Since config options are defined in a dynamic and distributed manner, this approach allows them to...

bentsherman

Support pipe for `dump` operator

5

Makes the `dump` operator behave like an actual operator (i.e. chainable) by moving it to `OperatorImpl`.

bentsherman

Remove privileged mode with Fusion

14

Close #3337 Currently includes: - [x] Docker - [x] Podman - [x] Wave debug command - [ ] AWS Batch Not sure yet what's needed for Singularity, but there is...

bentsherman