nextflow

nextflow copied to clipboard

Fix for Azure certificates compatibility

4

When running a CentOS container on a Debian based virtual machine on Azure (default), an error was thrown while mounting the certificates. This was because we tried to add them...

adamrtalbot

Add labels to Wave container config

2

This PR will provide config option to add labels to the container image build by wave

munishchouhan

Add defaults configuration settings

2

This PR aims to make default settings configurable via the nextflow configuration file. The primary goal is to allow the control the defaults of `publishDir` directive. It can be extend...

pditommaso

Static types for process inputs/outputs

13

This PR is an exploration intended to add support for static types for process inputs and outputs. TODO: - [x] refactor runtime classes to be independent of DSL - [x]...

bentsherman

Add example of dynamic directive with input file

2

See https://github.com/nextflow-io/nextflow/pull/4493#discussion_r1397589519 I don't really like this particular example because it is probably an anti-pattern, i.e. many tools are designed to stream the input data so that they don't have...

bentsherman

Support specifying disk image for additional disk with Google Batch

3

## New feature Support specifying a disk image for additional disk when using Google Batch. This would be useful in many cases but particularly with large reference files which can...

hnawar

Fix and improve warning about attribute setting in config profiles [ci-skip]

2

mribeirodantas

Add an option to the file method to checksum

1

# Description Adds the `checksum` option to the file method that allows to verify that a downloaded file at the stage directory is valid. **Notes**: - this is only verified...

jordeu

Throw error if a process defines multiple inputs with the same name

12

Close #4366

bentsherman

Include FileHolder stage name in task cache

1

Close #4106

bentsherman