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Grid executor reports invalid queue status in SLURM executor

20

## Bug report I am experiencing the very same problem described in #1045, but in my case, I am working with a SLURM executor. The main problem is that for...

yocra3

Get rid of file name rolling for reports, trace, dag and timeline generation

10

When creating the execution report and other resource files such as timeline, DAG and trace file, nextflow roll the name any existing file with the name. https://github.com/nextflow-io/nextflow/blob/3ef915128ee48ba3422cc7b13807c438ed170b4f/modules/nextflow/src/main/groovy/nextflow/trace/TraceFileObserver.groovy#L209-L210 This avoid the...

pditommaso

## New feature Give users the ability to provide [basic authentication](https://en.wikipedia.org/wiki/Basic_access_authentication) credentials via the weblog URL. So logs can be posted to a secured server. ## Usage scenario Collecting weblogs...

di-hardt

Nextflow not terminating after all tasks completed

8

## Bug report Hello, I submitted a `Nextflow` workflow to our cluster (`SLURM` scheduler), but `Nextflow` did not terminate after all tasks were completed. It eventually timed out because of...

mebbert

## Bug report ### Expected behavior and actual behavior Currently, no numbers are allowed in custom mnemonic names set with `-name` ### Steps to reproduce the problem `nextflow run hello...

matthdsm

Currently the official docs have just a [small footnote](https://www.nextflow.io/docs/latest/operator.html?highlight=groupkey#grouptuple) at the end of the section on `groupTuple`. It would be useful to have a concrete example of the input/output of...

awgymer

## Bug report (Please follow this template replacing the text between parentheses with the requested information) ### Expected behavior and actual behavior Expect nextflow workflow to error and halt. Actual...

grosscol

Joining channels using maps as the key to join by can fail on resume

3

## Bug report ### Expected behavior and actual behavior When joining two channels, for example, on the first element which is often a map with sample meta information, I would...

Midnighter

Google Batch should comply with --Error is ignored flag

7

## Bug report Google Batch stops running even though nextflow has supplied a --Error is ignored flag ### Expected behavior and actual behavior Google Batch should continue running even if...

zyosufzai

Hi, Thank you. I tried to override the resource settings with the below file for this [workflow](https://github.com/hoelzer-lab/rnaflow/). ``` > cat nextflow.config process { withName: 'deseq2' { memory = 60 GB...

mictadlo