Chunlei Wu

Results 98 issues of Chunlei Wu

package [`pyinotify`](https://github.com/seb-m/pyinotify) is no longer maintained, and it start to show a DeprecationWarning in Python 3.10: ``` ../../../../../opt/hostedtoolcache/Python/3.10.7/x64/lib/python3.10/site-packages/pyinotify.py:71 /opt/hostedtoolcache/Python/3.10.7/x64/lib/python3.10/site-packages/pyinotify.py:71: DeprecationWarning: The asyncore module is deprecated and will be removed in...

enhancement

A data plugin can be just a manifest file if it can use a common, pre-defined parser (e.g., shared across a set of data plugins with the same format of...

enhancement

The warning messages are available here: https://github.com/biothings/biothings.api/actions/runs/3056483833/jobs/4930695673 Roughly in three categories: DeprecationWarning ElasticsearchWarning PytestUnknownMarkWarning The fixes should be pretty straightforward, could just be upgrading the underlying packages, or replacing deprecating...

enhancement

We use Google's Universal Analytics for the API usage tracking. Google Analytics currently shows this warning: >Notification Universal Analytics will no longer process new data in standard properties beginning July...

enhancement

`name` and `biothing_type` can be two optional top-level keys in the manifest file. `name` can be used to set the data plugin name (default is the plugin repo name) `biothing_type`...

enhancement

Currently we only support the data release to a single Elasticsearch target host, which is defined in `STANDALONE_CONFIG` setting. Can we support multiple ES hosts for a single release conf...

enhancement

* create a data plugin template (manifest plugin) under `hub.dataplugin.templates` * create a command line tool like `biothings-admin dataplugin create` to create an empty data plugin template.

enhancement

* Find out all possible options for the `manifest.json` file from the code, and create a full example json file, or if needed, can be multiple example json files (e.g.,...

enhancement

We should update [this tutorial](https://docs.biothings.io/en/latest/tutorial/studio.html) to use an updated docker image based on the latest version from https://github.com/biothings/biothings_docker. We can release a new version to docker hub (https://hub.docker.com/r/biothings/biothings-studio) first, then...

enhancement

See this error from Google Analytics (for MyGene.info): > Hits are dropped > > First detected: Jan 15, 2022 11:07:17 AM > Last detected: Apr 1, 2022 10:47:00 AM >...