Chunlei Wu

MyChem query endpoint should return a subset of field by default

2

Similar to how mygene.info/v3/query behavior. By default, the matching hits return a subset of "essential fields" by default, instead of all available fields. This will return hits much smaller and...

new data source: DSigDB

1

http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/geneSearch.html

This is very minor and low priority. I found myself many times to click into [data](/biothings/mychem.info/tree/master/src/data) folder instead when I actually wanted to go to [hub](/biothings/mychem.info/tree/master/src/hub) folder. Probably just because...

New data source: Guide to Pharmcology

1

http://www.guidetopharmacology.org/download.jsp CC-BY-SA

Create json schema for x-bte extensions

3

Similar to other OpenAPI extension schemas we support here: https://github.com/SmartAPI/smartAPI/blob/77cdc450009beb52ee728071953203780b33a541/src/schemas.ini Let's create json schema file for our `x-bte` extension too.

A minor UI issue I noticed. It probably only shows on a large screen:  but we should align those badges with the title.

Our SmartAPI's own API is registered here: https://smart-api.info/registry?q=27a5b60716c3a401f2c021a5b718c5b1 Its metadata is here: https://github.com/SmartAPI/smartapi_registry/blob/master/SmartAPI/smartapi_openapi.yml Its live API documentation page renders here: https://smart-api.info/ui/27a5b60716c3a401f2c021a5b718c5b1

Evaluate the latest v5 (currently in beta) of the swagger editor: https://github.com/swagger-api/swagger-editor/releases We can upgrade SmartAPI to use the latest v5 or just upgrade to the latest v4 stable version.

Support metakg queries with biolink model's semantic descendants

1

Each edge in SmartAPI's metakg contains `subject`, `object`, `predicate` fields which are the terms based on the biolink model. We should add the metakg query support for searching on either...

Harvest metakg from the supported APIs and provide an endpoint to query aggregated metakg

2

Translator APIs in SmartAPI registry provide meta-knowledgegraph (or metakg) information. These APIs can be [TRAPI](https://github.com/NCATSTranslator/ReasonerAPI) APIs or those APIs annotated by `x-bte` extensions. We can regularly harvest metakg info from...