BraTS-Toolkit

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support to write .nii files (not .nii.gz)

3

Hi everyone, first of all thank you for providing this tool to the public. I tried to run the `brats-segment` script from the command line on my Ubuntu 18.04 virtual...

samuelholly

Preprocessor stuck on running HD-Bet

3

Hi, I'm trying to use the BraTS preprocessor, and it is getting stuck on the "running HD-Bet." Does anyone face this issue before when using this preprocessor? Thank you! I...

chocolatetoast-chiu

spawn root helper docker container for root_issue==True dockers

2

spawn root helper docker container for root_issue==True dockers

neuronflow

trouble with docker connection

7

Hello, I get this error [Errno 2: No such file or directory: 'docker': 'docker'] when trying to run the prep.single_preprocess command in Google colab. I've downloaded Docker Desktop for Windows...

hermanovak

Segmentation does not run on RTX 3080.

13

BraTS-Toolkit does not yet work with RTX 3080 GPUs. Is there a fix already, or is fixing this planned? Details: when running e.g. isen-20 using nvidia-docker2, via the BraTS-Toolkit, in...

vincenzoml

Can not install this version

3

I noticed that installing this version need install the SimpleITK 2.1.1.1, but this version is not provided now

PengYida

ERROR DETAIL: Preprocessor.__init__.<locals>.connect_error() takes 0 positional arguments but 1 was given

7

Hi all, when I run the single case preprocessing exampel on MacOS 12.5.1 with an Apple M1, I get the error: ``` ERROR DETAIL: Preprocessor.__init__..connect_error() takes 0 positional arguments but...

gschramm

brats-preprocess stuck on "status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}"

1

Hello, I wanted to ask what I can do when the `brats-preprocess` CLI command hangs on the "status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}" message. A firewall warning pops-up...

samuelholly

Hello, I used the BTK for brain co-registration and I thank you for it. I would like to know if you are also developing a pipeline for co-registration of pancreas...

DanielaTalba1

BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."

32

Hi everyone, I work on a computing server. And by wanting to use single preprocessing I get stuck at: ``` status reveived: {'code': 201, 'message': 'input inspection queued!'} status reveived:...

Lucas-rbnt