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trouble with docker connection

Open hermanovak opened this issue 4 years ago • 7 comments

Hello, I get this error [Errno 2: No such file or directory: 'docker': 'docker'] when trying to run the prep.single_preprocess command in Google colab. I've downloaded Docker Desktop for Windows and I have it open. Any ideas on how to solve the issue? Thanks!

hermanovak avatar Sep 08 '21 12:09 hermanovak

can you run the nvidia docker toolkit hello-world? https://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html#id5

neuronflow avatar Sep 08 '21 13:09 neuronflow

yes! I did manage to run it

hermanovak avatar Sep 08 '21 13:09 hermanovak

can you please elaborate what is the connection between your windows and google colab installation? the error msg looks like you don't have docker properly installed.

neuronflow avatar Sep 08 '21 14:09 neuronflow

I'm not sure what the connection is, I haven't attempted to connect docker to it besides running the example python code here https://github.com/neuronflow/BraTS-Toolkit/blob/master/0_preprocessing_single.py with my own images. I initially tried using the brats_preprocessor.app itself but after pressing "start backend" (once I've selected the folders) the startup would fail and I could see the docker container disappear. Does that give enough info? Sorry I'm a bit new to this..

hermanovak avatar Sep 08 '21 14:09 hermanovak

Hi, my name is Fernando . I am student of Biomedical Engineer and I am trying to use the Brats Preprocessor in a web app I am developing. I have a problem whit docker and I dont know why the program dont work. I have a Mac year 2017 and I have follow the steps the guide but I dont get that preprocessor work. Put the error , if someone can help me I would appreciate it very much. This is the error: FileNotFoundError: [Errno 2] No such file or directory: 'docker'. I have the docker installed but i dont know because the program dont work. All the best, Fernando.

nandomoreno20 avatar Oct 05 '21 20:10 nandomoreno20

@nandomoreno20 my issue was the same and I didn't get it to work unfortunately, so I haven't used the preprocessor

hermanovak avatar Oct 06 '21 08:10 hermanovak

FileNotFoundError: [Errno 2] No such file or directory: 'docker'. I have the docker installed but i dont know because the program dont work. Is your docker daemon running? Can you provide more details?

neuronflow avatar Oct 16 '21 10:10 neuronflow

closing until more details are provided, feel free to reopen.

neuronflow avatar Aug 19 '22 09:08 neuronflow