spawn root helper docker container for root_issue==True dockers

[neuronflow]

spawn root helper docker container for root_issue==True dockers

[aecelaya]

Hi, has there been any progress on this issue?

[neuronflow]

Currently, I have a dirty solution, where I spawn another docker container afterward changing the file ownership and permissions. It is so dirty I feel too ashamed to release it 🙈

We are currently discussing how to move forward with BTK. I also made another more lightweight preprocessing pipeline, which I might release. Also, I have several improvements for the original pipeline in mind, which would also fix this issue.

If you cannot run the current preprocessor captk might be an alternative worth looking into. As BTK is modular you can then still use the segmentor and fusionator.