brats-preprocess stuck on "status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}"

[samuelholly]

Hello,

I wanted to ask what I can do when the brats-preprocess CLI command hangs on the

"status reveived: {'code': 201, 'message': 'scheduling BRATS preprocessing!'}" message.

A firewall warning pops-up during the processing. Can the hang-up be caused by not clicking "allow access" in the warning?

I'm running WSL2 Ubuntu 18.04 on a workstation:

CPU: Intel(R) Xeon(R) W-1270 CPU @ 3.40GHz (8 cores, 16 threads) RAM: 48 GB (Intel Optane) GPU: Quadro RTX 4000

The command line call: brats-preprocess -t1 t1.nii -t1c t1_ce.nii -t2 t2.nii -fla flair.nii -o brats_preprocess_out/ --gpu

Thank you in advance.

Best regards

[neuronflow]

Thanks for your interest in BTK. Yes, it is likely that your firewall intercepts the communication between the front- and backend.

[neuronflow]

closed until more details are provided

[neuronflow]

This is most likely a duplicate of: https://github.com/neuronflow/BraTS-Toolkit/issues/18

-> try running with .nii.gz files until we have a fix :)