MungeSumstats

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Column name handling: start/end

8

Currently, we don't have start/end in the mapping file. This isn't a problem for 1bp-wide features like SNPs (in the strict sense of the term), but if you include indels/structural...

bschilder

Create a shell wrapper for `MungeSumstats` for use in CLI-based tools such as PolyFun: https://github.com/omerwe/polyfun/issues/10

bschilder

Avoid appending old log files

4

# Reprex ```R gwas_paths

bschilder

Differentiate between errors and restricted datasets

5

Some OpenGWAS datasets don't show any data links on their website, I think because they're restricted use (at least currently). e.g. https://gwas.mrcieu.ac.uk/datasets/finn-b-G6_ALZHEIMER/ Currently, `MungeSumstats` gives a message saying this this...

bschilder

Discussed previously #18

bschilder