qtl topic

List qtl repositories

QTLseqr

63
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42
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QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

eqtlbma

22
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12
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Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

binQTL

15
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2
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QTL mapping with binmap data

GeneticsMakie.jl

81
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2
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🧬High-performance genetics- and genomics-related data visualization using Makie.jl

lme4qtl

48
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10
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Mixed models @lme4 + custom covariances + parameter constraints

MungeSumstats

66
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15
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Rapid standardisation and quality control of GWAS or QTL summary statistics

ggLocusZoom

20
Stars
4
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Create LocusZoom-style plots in R.

echolocatoR

34
Stars
11
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Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.