Nelson Ruth comments

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                                            Nelson Ruth

warning message when trying to create sanky diagram

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FastTreeMP returned non-zero exit status 1.

I am also having this error. ``` phylophlan \ -i $input_genomes \ -d phylophlan \ -f $config_dir/supermatrix_aa.cfg \ --diversity medium\ --fast \ -o $out_dir/$ref \ --nproc 28 ``` Which returns...

Not able to plot a daylight unrooted tree

I see this as well with ggtree 3.10.0

IndexError: list index out of range

You have to specify a directory of genomes instead of a single file. See #346