IndexError: list index out of range

[sandipandrils]

I am trying to work on a genome to analyze with checkm with the following commands

checkm lineage_wf -x fa Galaxy80-[GCA_009932715.2_ASM993271v2_genomic.fna].fasta ../CheckM-output/

Got the following error:[2023-05-22 17:57:32] INFO: CheckM v1.2.2 [2023-05-22 17:57:32] INFO: checkm lineage_wf -x fa Galaxy80-[GCA_009932715.2_ASM993271v2_genomic.fna].fasta ../CheckM-output/ [2023-05-22 17:57:32] INFO: CheckM data: /home/sandipan/Work/Anindita/Checkm/ [2023-05-22 17:57:32] INFO: [CheckM - tree] Placing bins in reference genome tree.

Unexpected error: <class 'IndexError'> Traceback (most recent call last): File "/home/sandipan/anaconda3/envs/checkm/bin/checkm", line 856, in checkmParser.parseOptions(args) File "/home/sandipan/anaconda3/envs/checkm/lib/python3.9/site-packages/checkm/main.py", line 979, in parseOptions self.tree(options) File "/home/sandipan/anaconda3/envs/checkm/lib/python3.9/site-packages/checkm/main.py", line 141, in tree binFiles = self.binFiles( File "/home/sandipan/anaconda3/envs/checkm/lib/python3.9/site-packages/checkm/main.py", line 106, in binFiles binFile = files[1] IndexError: list index out of range

Anyone can help. I am new to this. The test worked fine.

[nelsonruth11]

You have to specify a directory of genomes instead of a single file. See #346