warning message when trying to create sanky diagram

[DS-Rodrigues]

Hi Thomas

I am following the steps you posted in your article "The ggforce Awakens (again)" to generate a sanky diagram in R but I am getting the following warning message when trying to generate the plot: Warning message: Computation failed in stat_parallel_sets(): non-numeric argument to binary operator

The output I am getting is only a bar for Hospital_ID and nothing else. 'Hospital_ID', 'Patient_ID' and 'Therapy' are factor variables and 'value' is numerical. I have 750 different patients from 24 different centres who can undertake up to 10 different therapies.

My final dataset is like this:

head(dataset) Hospital_ID Patient_ID Therapy variable value id x y 1 40 44455 Infli value 1 1 Hospital_ID 1 2 40 44455 Infli value 1 2 Hospital_ID 1 3 40 44455 Infli value 1 3 Hospital_ID 1 4 40 33376 Etan value 1 4 Hospital_ID 1 5 40 33376 Etan value 1 5 Hospital_ID 1 6 40 3655351 Infli value 1 6 Hospital_ID 1

Would you be able to help?

Thanks so much in advance for your help! Daniela

[DS-Rodrigues]

Just another thing, I have tried again and now it says:

df_new <- gather_set_data(df,1:3) Error: lazy-load database '/Library/Frameworks/R.framework/Versions/3.5/Resources/library/ggforce/R/ggforce.rdb' is corrupt In addition: Warning message: internal error -3 in R_decompress1

Thanks Daniela

[nelsonruth11]

Was this ever resolved?

[thomasp85]

A lot has changed since the issue was filed - if I can get a reprex (see https://www.tidyverse.org/help/) I'll be happy to take a look